Miss Circle: Paper Education features an intriguing storyline revolving around Miss Circle, a character known for her sinister actions in Basics in Behavior. The game unfolds with intense moments like Miss Circle chasing and ultimately killing characters, adding a dark twist to the narrative. Players encounter Miss Circle in various scenarios, from classroom outbursts to deadly pursuits, creating an immersive and suspenseful gaming experience.

Throughout the game, Miss Circle's interactions with other characters like Abbie, Lana, and Claire deliver a mix of tension and mystery. The game's narrative unfolds dynamically, keeping players engaged with unexpected plot twists and character developments.